PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_C13753B31.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 332aa    MW: 35599.6 Da    PI: 4.3923
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_C13753B31.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-171663148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT++Ed +l+ +++++G  +W++ +r  g+ R++k+c++rw +yl
  Traes_6AL_C13753B31.1 16 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 63
                           89******************************99************97 PP

2Myb_DNA-binding51.52.3e-1669114148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE+   ++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Traes_6AL_C13753B31.1  69 RGNFTAEEEATVIKLHALLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114
                            89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2111163IPR017930Myb domain
SuperFamilySSF466892.42E-2913110IPR009057Homeodomain-like
SMARTSM007171.4E-121565IPR001005SANT/Myb domain
PfamPF002497.1E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-221770IPR009057Homeodomain-like
CDDcd001673.61E-101863No hitNo description
PROSITE profilePS5129424.87664118IPR017930Myb domain
SMARTSM007173.8E-1468116IPR001005SANT/Myb domain
PfamPF002498.3E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2671117IPR009057Homeodomain-like
CDDcd001673.58E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPRQAGLLR CGKSCRLRWI  60
NYLRPDLRRG NFTAEEEATV IKLHALLGNK WSKIAACLPG RTDNEIKNVW NTHLKKKASE  120
QKPGVGGSKG EPADGDPDTP VPSLSSASSS MTTSEGSNGG AGEQCGTSNE PETMDVPSPL  180
ELELEPVMDI LGMLADAPTE ALATAAPMPT SSCSSSSPTT CAGGGGGVEE LLELPDIDMD  240
ADIWSIIDDD VARLQQGDAT VPCTTKASPE EEGNEWWLAD LEKELGLWGP TEESQPQAGP  300
HDQIGYPGQD MEMVMSSSYP QSRSDHEASN SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1msf_C1e-25141172104C-Myb DNA-Binding Domain
1mse_C1e-25141172104C-Myb DNA-Binding Domain
1h8a_C1e-251411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486491e-131AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBankAK3696891e-131AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647724.11e-126PREDICTED: myb-related protein Zm1-like
SwissprotP200241e-112MYB1_MAIZE; Myb-related protein Zm1
TrEMBLW5GA120.0W5GA12_WHEAT; Uncharacterized protein
STRINGMLOC_71418.21e-175(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.14e-67myb domain protein 63
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]